PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0042s0570.10.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 399aa    MW: 44383.8 Da    PI: 7.8774
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0042s0570.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-092293057
                             HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57
                             + eLA+++gLte+q++ WF+ rR k+k+
  SapurV1A.0042s0570.10.p  2 KSELADQIGLTEKQISSWFCHRRLKDKR 29
                             579***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000862.62E-7129No hitNo description
PROSITE profilePS5007111.726130IPR001356Homeobox domain
PfamPF000468.7E-7229IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-9229IPR009057Homeodomain-like
SuperFamilySSF466893.17E-7234IPR009057Homeodomain-like
PROSITE patternPS000270528IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MKSELADQIG LTEKQISSWF CHRRLKDKRL RDEGCTNGRQ DRSSGIIQDR GSGLRQDSCG  60
STKQGDYRNL DPREVESQRP YGQNFHTADL TYDRTSRYTG HDSSIDNISS GSSSSLQDKF  120
VSQREDPYDA ENSKYLAQNE AAMPLIPKGA DSFGYKPSGY LKVKGEIENA AITAVKMQLG  180
RHYKEDGPPL GVEFQPLPPG AFASPSRDPA NGPIYVGDLA RMCSPDVSGV RKQSSLGTRY  240
EVYGTKMSSH DSYTEGANCN PEHSDSHDKK SHHHLEQKPT YNGSNSNAGG NSAMDMPDDL  300
AGETSAYVNK RHYRMSSKHG FEGRRLDSLS THHGPSGRRN SEKTEAWLYD CNNDNPKIVQ  360
RNNYMSKHPH LMRGFGKSLD TEERAPRTIT EKLYIGCV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313994.20.0hypothetical protein POPTR_0009s07600g
TrEMBLB9HNF30.0B9HNF3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.13e-69HB-other family protein